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Submit job
Code Block language bash sbatch cryospark-master.slurm
Warning title cryoSPARC master job There should be only one job which run cryoSPARC master in
plgrid-servicies
partition per user.Check whether job was started
Code Block language bash squeue -j <JobID>
Common states of jobs
PD - PENDING
- Job is awaiting resource allocation.R - RUNNING
- Job currently has an allocation and is running.CF - CONFIGURING
- Job has been allocated resources, but are waiting for them to become ready for use (e.g. booting). On PrometheusCF
state could last for up to 8 minutes in case when nodes that have been in power save mode.CG - COMPLETING
- Job is in the process of completing. Some processes on some nodes may still be active.
Make a tunnel
In your directory cat job log file:
Code Block language bash cat cryospar-master-log-<JobID>.txt
where `
XXXXXXX
` is your sbatch job id which is displayed after you run it f.e. `cat cryospar-master-log-49145683.txt
`It will show you something like this:
Code Block language bash Copy/Paste this in your local terminal to ssh tunnel with remote ----------------------------------------------------------------- ssh -o ServerAliveInterval=300 -N -L 40100:172.20.68.193:40100 plgusername@pro.cyfronet.pl ----------------------------------------------------------------- Then open a browser on your local machine to the following address ------------------------------------------------------------------ localhost:48511 ------------------------------------------------------------------
Exec in another shell at your local computer given command to make a tunnel:
Code Block language bash ssh -o ServerAliveInterval=300 -N -L 40100:172.20.68.193:40100 plgusername@pro.cyfronet.pl
- Log into cryoSPARK web application - open in browser: `
localhost:40100
`
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