Page History

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• main log in  ~/.cryosparc/log/run/command_core.log


  Code Block
  title database log
  less ~/.cryosparc/log/run/command_core.log

  
  

• supervisor log in  ~/.cryosparc/log/run/supervisord.log

  Code Block
  title database log
  less ~/.cryosparc/log/run/supervisord.log

  
  

• database log in ~/.cryosparc/log/run/database.log

  Code Block
  title database log
  less ~/.cryosparc/log/run/database.log

  
  

• if there is information that database is  "node is not in primary or recovering state" i.e. below

  
  

  Code Block
  title cryoSPARC log with error
  AssertionError: {'code': 500, 'data': None, 'message': "OtherError: node is not in primary or recovering state, full error: {'ok': 0.0, 'errmsg': 'node is not in primary or recovering state', 'code': 13436, 'codeName': 'NotMasterOrSecondary'}

  then:

  Warning
  title backup of projects
  Backup all your projects and data before removing cryoSPARC database. Usually it should not be a problem to import them without backup but you should backup projects just in case.

  • you have to move current cryoSPARC database

    Code Block
    title database log
    mv ~/.cryosparc/cryosparc_database ~/.cryosparc/cryosparc_database-$(date+"%Y-%m-%d")

    
    

  • rerun  configuration of cryoSPARC to rebuild database

  • import projects that you want working with

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