Page History

...

• main log in  ~/.cryosparc/log/run/command_core.log


  Code Block
  title database log
  less ~/.cryosparc/log/run/command_core.log

  
  

• supervisor log in  ~/.cryosparc/log/run/supervisord.log

  Code Block
  title database log
  less ~/.cryosparc/log/run/supervisord.log

  
  

• database log in ~/.cryosparc/log/run/database.log

  Code Block
  title database log
  less ~/.cryosparc/log/run/database.log

  
  

• if there is information that database is  "node is not in primary or recovering state" i.e. below

  
  

  Code Block
  title cryoSPARC log with error
  AssertionError: {'code': 500, 'data': None, 'message': "OtherError: node is not in primary or recovering state, full error: {'ok': 0.0, 'errmsg': 'node is not in primary or recovering state', 'code': 13436, 'codeName': 'NotMasterOrSecondary'}

  then:

  Warning
  title backup of cryoSPARC projects
  Backup all your projects and data before removing cryoSPARC database. Usually it should not be a problem to import them without backup but you should backup projects just in case. You have to remember that each cryoSPARC database start naming projects from P1, therefore it is best to backup projects to i.e. $PLG_GROUPS_STORAGE/<your-plggteam> space.

  • you have to move current cryoSPARC database

    Code Block
    title database log
    mv ~/.cryosparc/cryosparc_database ~/.cryosparc/cryosparc_database-$(date+"%Y-%m-%d")

    
    

  • rerun  configuration of cryoSPARC to rebuild database

  • import projects that you want working with

...