Quick tutorial how to use PLGrid Infrastructure at ACC Cyfronet AGH.
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Training is going to be conducted at Zoom platform. Link to training on Wed 25th Nov at 10:00: https://cyfronet.zoom.us/j/5511864266?pwd=TzZIZWc4aitvRG1OTVI1azJQQ0hiQT09 |
Setup
Accounts
Each trainee is going to use his or her PLGrid account on Prometheus cluster. To obtain such account trainee has to register at Portal PLGrid webpage. Deails of procedure is described in PLGRID - accounts and affiliation.
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In case of any questions do not hesitate to contact me through e-mail: klemens.noga@cyfronet.pl
Materials and resources
SLURM scripts - slurm.tar.gz
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Relion tutorial - relion31_tutorial.pdf
Relion documentation at BIOwulf - https://hpc.nih.gov/apps/RELION/
Questions and issues
- So where we can find scripts from relion to use in sbatch ?
- Klemens Noga prepare scripts and put it below.
- Describe in details workload with RELION
- using pro-viz
- using sbatch
- How to setup and use users python module
- How to open pdf files in pro-viz
- Feature request: Chimera in pro-viz
- How to solve memory or time limit problems in cryosparc
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